Dockerfile for PET2BIDS #359
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bendhouseart
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Jul 14, 2025
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Works and approved, but please update the Readme with something like the following as a last step.
Docker Usage
To build the docker file run:
docker build . -t openneuropet/pet2bids
Then mount and run your conversions on your input folders like so:
docker run --rm -it \ -v /path/to/dicoms:/dicoms:ro \ -v /path/to/outputdir:/out \ openneuropet/pet2bids dcm2niix4pet /dicoms --destination-path /out
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Great, thank you. All done! |
bendhouseart
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Sep 9, 2025
* Bug Fix for sidecar flag on ecat2bids (#358) Fixes template json and sidecar issues posted by users Specifically fixes issues #352 and #354 posted on the github Rolling into version 1.4.4 * Dockerfile for PET2BIDS (#359) * Dockerfile for PET2BIDS * Updated ReadMe with docker usage * accept changes to avoid double [[ ]] solves #361 * Adding header information for ecat71 (#362) Courtesy of Mark Lubberink * Enhance README with spreadsheet usage instructions Added sections for single and multiple subject spreadsheets with links to templates and examples. * add dcm2niix binaries --------- Co-authored-by: Rami Hamati <[email protected]> Co-authored-by: Cyril Pernet <[email protected]> Co-authored-by: Granville Matheson <[email protected]>
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I've made a Docker image for PET2BIDS.
Here is an example usage:
docker run --rm -it \ -v /path/to/dicoms:/dicoms:ro \ -v /path/to/outputdir:/out \ [container_name] dcm2niix4pet /dicoms --destination-path /out📚 Documentation preview 📚: https://pet2bids--359.org.readthedocs.build/en/359/